Role of an invariant lysine residue in folate binding on Escherichia coli thymidylate synthase: Calorimetric and crystallographic analysis of the K48Q mutant

Aldo A. Arvizu-Flores, Rocio Sugich-Miranda, Rodrigo Arreola, Karina D. Garcia-Orozco, Enrique F. Velazquez-Contreras, William R. Montfort, Frank Maley, Rogerio R. Sotelo-Mundo*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

10 Scopus citations

Abstract

Thymidylate synthase (TS) catalyzes the reductive methylation of deoxyuridine monophosphate (dUMP) using methylene tetrahydrofolate (CH2THF) as cofactor, the glutamate tail of which forms a water-mediated hydrogen bond with an invariant lysine residue of this enzyme. To understand the role of this interaction, we studied the K48Q mutant of Escherichia coli TS using structural and biophysical methods. The kcat of the K48Q mutant was 430-fold lower than wild-type TS in activity, while the Km for the (R)-stereoisomer of CH2THF was 300 μM, about 30-fold larger than Km from the wild-type TS. Affinity constants were determined using isothermal titration calorimetry, which showed that binding was reduced by one order of magnitude for folate-like TS inhibitors, such as propargyl-dideazafolate (PDDF) or compounds that distort the TS active site like BW1843U89 (U89). The crystal structure of the K48Q-dUMP complex revealed that dUMP binding is not impaired in the mutant, and that U89 in a ternary complex of K48Q-nucleotide-U89 was bound in the active site with subtle differences relative to comparable wild-type complexes. PDDF failed to form ternary complexes with K48Q and dUMP. Thermodynamic data correlated with the structural determinations, since PDDF binding was dominated by enthalpic effects while U89 had an important entropic component. In conclusion, K48 is critical for catalysis since it leads to a productive CH2THF binding, while mutation at this residue does not affect much the binding of inhibitors that do not make contact with this group.

Original languageEnglish
Pages (from-to)2206-2217
Number of pages12
JournalInternational Journal of Biochemistry and Cell Biology
Volume40
Issue number10
DOIs
StatePublished - 2008

Bibliographical note

Funding Information:
This work was supported by Consejo Nacional de Ciencia y Tecnología (CONACYT) México D.F. grant 48991-Z (RRS), by American Cancer Society Grant RPG-93-041-04-CDD (WRM); Arizona Disease Control Research Commissions Grant 1-208A (WRM); National Cancer Institutes grant CA44355 (FM), the State Committee for Scientific Research Grant No. 4 P05F 030 11p02 (WRM). We thank Secretaría de Educación Pública (México) for grant PIFI 2004-26-09 for the purchase of the isothermal titration calorimeter. We thank Drs. Sue Roberts and Andrzej Weichsel (University of Arizona) for critical reading and expert assistance. A. Arvizu-Flores received a graduate scholarship from CONACYT and R. Arreola received a postdoctoral fellowship from UNAM (Universidad Nacional Autónoma de México). A. Arvizu-Flores designed and performed research, analyzed data and wrote the paper, R. Sugich-Miranda performed research and analyzed data, R. Arreola analyzed data and wrote the paper, K. Garcia-Orozco performed research, E. Velazquez-Contreras designed research and contributed analytical tools, F. Maley designed research, performed research, contributed new reagents and wrote the paper, W. Montfort designed research and analyzed data, R. Sotelo-Mundo designed and performed research, analyzed data and wrote the paper.

Keywords

  • Isothermal titration calorimetry
  • Mutant K48Q
  • Protein crystallography
  • Thymidylate synthase
  • Tryptophan fluorescence

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